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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2498319_2500829_F

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2498319 - 2500829
Intron Length:
2511

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGG|GCTGATACC
5'SS Class:
weak_major
3'SS Sequence:
TGGGGTCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TTCTTCCCAGTG
Flanking Amino Acid:
TTRTRMFSGKGSLSSGGSFT
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.3
0.1
1.4
62.5
40.2
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
69
0.43
1
58.2
47.3
Minor 5ss
20.6
-3.4
3.5
21.3
28.4
Minor BPS
43.1
-0.6
2
51.67
43.3

Associated Gene:

Gene:
ULK1
Ensembl Gene ID:
ENSAPLG00000014729
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015450
2432092 - 2511157
79066