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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2509184_2511101_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2509184 - 2511101
Intron Length:
1918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTTAT
U12 Branch Point Sequence:
GTTGTGTTATTT
Flanking Amino Acid:
EQGDIENINKCKLCIERRLS
Intron Amino Acid Position:
736

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
83.4
28
Major BPS
63.6
0.34
1.4
57.4
49.1
Major PPT
87.9
0.85
0.7
81
31
Minor 5ss
35.6
-1.6
3.5
53.7
43.8
Minor BPS
45.9
-0.2
2.3
67.46
44.1

Associated Gene:

Gene:
ULK1
Ensembl Gene ID:
ENSAPLG00000014729
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015450
2432092 - 2511157
79066