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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2534924_2536570_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
2534924 - 2536570
Intron Length:
1647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGACAT
5'SS Class:
major
3'SS Sequence:
TTTTCTTGTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATATATTAAAGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
0.9
69.4
36.6
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
84.5
0.78
0.8
85.1
29.7
Minor 5ss
34.3
-1.8
3.1
46.9
48.4
Minor BPS
47.4
-0.1
2.1
67.84
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018912
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019450
2534077 - 2544860
10784