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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2536014_2536570_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
2536014 - 2536570
Intron Length:
557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTGTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATATATTAAAGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.2
36.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
84.5
0.78
0.8
85.1
29.7
Minor 5ss
32.1
-2
3.1
40.2
45.9
Minor BPS
47.4
-0.1
2.1
67.84
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018912
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046626
2535813 - 2544860
9048