About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2538298_2538586_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2538298 - 2538586
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATTTAATAAAT
Flanking Amino Acid:
IARGRDIHIYRLVSGNSVEE
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1.1
83.9
30.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
88.8
0.87
0.7
83.2
31.9
Minor 5ss
46.2
-0.4
2.8
66.9
44.4
Minor BPS
51.7
0.13
1.9
76.84
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018912
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043593
2531556 - 2544216
12661
ENSAPLT00000031006
2531556 - 2544791
13236
ENSAPLT00000019450
2534077 - 2544860
10784
ENSAPLT00000046626
2535813 - 2544860
9048