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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2538699_2538933_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2538699 - 2538933
Intron Length:
235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTAAA
5'SS Class:
major
3'SS Sequence:
CATGTTTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAA
U12 Branch Point Sequence:
TGATTAAAAAAT
Flanking Amino Acid:
DDCSVGFLTQVLCTECGKEN
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
76.2
34.5
Major BPS
64.3
0.36
1
71.3
30.3
Major PPT
68.1
0.41
0.9
67.3
38.8
Minor 5ss
34
-1.8
2.9
42.5
44.3
Minor BPS
41.6
-0.5
2.1
61.06
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018912
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031006
2531556 - 2544791
13236
ENSAPLT00000019450
2534077 - 2544860
10784
ENSAPLT00000046626
2535813 - 2544860
9048
ENSAPLT00000043593
2531556 - 2544216
12661