About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2539087_2539851_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2539087 - 2539851
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTGAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TTTTTCTGAATA
Flanking Amino Acid:
LEELASFVDQLTPIEKYALN
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.4
36.4
Major BPS
61.3
0.28
1
62
30.6
Major PPT
75.7
0.58
0.9
74.1
35.4
Minor 5ss
43.4
-0.7
2.8
56.4
47.7
Minor BPS
75.8
0.8
1.3
83.85
29.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018912
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043593
2531556 - 2544216
12661
ENSAPLT00000031006
2531556 - 2544791
13236
ENSAPLT00000019450
2534077 - 2544860
10784
ENSAPLT00000046626
2535813 - 2544860
9048