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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2540457_2540890_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2540457 - 2540890
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACACCA
5'SS Class:
major
3'SS Sequence:
TTTTCTCATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATAC
Flanking Amino Acid:
TYTRQDAYNMEFVCERPDGQ
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.42
1.2
58
41.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
85.8
0.81
0.8
81.2
29.8
Minor 5ss
37.9
-1.4
3.1
46.2
43
Minor BPS
53.8
0.1
1.9
71.65
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018912
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031006
2531556 - 2544791
13236
ENSAPLT00000019450
2534077 - 2544860
10784
ENSAPLT00000046626
2535813 - 2544860
9048
ENSAPLT00000043593
2531556 - 2544216
12661