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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2540936_2541042_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2540936 - 2541042
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTATTATTAATT
Flanking Amino Acid:
RPDGQAEMMPIWTPPVVPEN
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.1
67.5
39.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
82.1
0.72
1
86.9
31.1
Minor 5ss
36.4
-1.5
3
51.1
45.2
Minor BPS
71.1
0.74
1.5
85.74
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018912
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046626
2535813 - 2544860
9048
ENSAPLT00000043593
2531556 - 2544216
12661
ENSAPLT00000031006
2531556 - 2544791
13236
ENSAPLT00000019450
2534077 - 2544860
10784