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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2541197_2541708_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2541197 - 2541708
Intron Length:
512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTTGG
5'SS Class:
major
3'SS Sequence:
TCTTGTCAATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
GTCTTGTCAATT
Flanking Amino Acid:
ARKRQRTDLPSSGERKKHCG
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.1
64.4
42.2
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
67.7
0.4
1
67.8
38
Minor 5ss
42.2
-0.9
2.8
55.2
43.3
Minor BPS
47.8
-0
2.2
68.05
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018912
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046626
2535813 - 2544860
9048
ENSAPLT00000043593
2531556 - 2544216
12661
ENSAPLT00000031006
2531556 - 2544791
13236
ENSAPLT00000019450
2534077 - 2544860
10784