About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2541831_2542108_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2541831 - 2542108
Intron Length:
278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAACAG
5'SS Class:
major
3'SS Sequence:
CTCTCTCCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTCTCTCCACT
Flanking Amino Acid:
KSKAQKARFLAVKELLALPL
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1
57.6
41.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
69.3
0.43
0.8
63.2
33
Minor 5ss
30.8
-2.2
3.1
35.7
42.1
Minor BPS
50.1
0.08
2
73.07
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018912
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043593
2531556 - 2544216
12661
ENSAPLT00000031006
2531556 - 2544791
13236
ENSAPLT00000019450
2534077 - 2544860
10784
ENSAPLT00000046626
2535813 - 2544860
9048