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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2543439_2543957_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2543439 - 2543957
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTTCG
5'SS Class:
major
3'SS Sequence:
TCTGTTGTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAG
U12 Branch Point Sequence:
TCTGTTGTCATA
Flanking Amino Acid:
SAEPMMTMEKALLEGLLAPQ
Intron Amino Acid Position:
559

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.3
65
41.7
Major BPS
64.6
0.36
1.5
63.4
44.3
Major PPT
73
0.52
0.9
68.1
37.6
Minor 5ss
42
-0.9
2.5
50.8
45.6
Minor BPS
40.9
-0.7
2.3
53
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018912
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046626
2535813 - 2544860
9048
ENSAPLT00000043593
2531556 - 2544216
12661
ENSAPLT00000031006
2531556 - 2544791
13236
ENSAPLT00000019450
2534077 - 2544860
10784