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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2544078_2544213_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2544078 - 2544213
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGAGTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
TCTGTTTTGAGT
Flanking Amino Acid:
TQSQPQWGAQ*
Intron Amino Acid Position:
715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
74.6
28.6
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
73.3
0.52
1.1
70.4
44.5
Minor 5ss
25.3
-2.8
3.2
31.7
42.9
Minor BPS
51.1
0.12
1.7
69.3
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018912
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043593
2531556 - 2544216
12661