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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2557581_2558989_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2557581 - 2558989
Intron Length:
1409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTGAG
5'SS Class:
major
3'SS Sequence:
TATTGTATCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
TTTGAGGTAACC
Flanking Amino Acid:
RKWKMATAKKMVRTVARYHE
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1.1
65.3
40.7
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
71.8
0.49
0.9
66.2
39.3
Minor 5ss
31
-2.2
3.3
40.3
45.8
Minor BPS
43.9
-0.4
2.7
66.9
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015697
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029291
2554373 - 2593730
39358
ENSAPLT00000027716
2554373 - 2593730
39358
ENSAPLT00000016453
2554373 - 2593730
39358
ENSAPLT00000043508
2554373 - 2593730
39358