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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2559131_2559242_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2559131 - 2559242
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTACATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTATTAGACT
Flanking Amino Acid:
IEYFWSNIEQVVEIKLQIEF
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
75.2
0.57
0.9
71.9
38.2
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
59.9
0.39
1.9
83.83
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015697
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027716
2554373 - 2593730
39358
ENSAPLT00000016453
2554373 - 2593730
39358
ENSAPLT00000043508
2554373 - 2593730
39358
ENSAPLT00000029291
2554373 - 2593730
39358