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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2564503_2564885_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2564503 - 2564885
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCATGT
5'SS Class:
major
3'SS Sequence:
TCCGTTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
TCTGTCTCACCC
Flanking Amino Acid:
SQRELRAKRQEWSEPNSFNV
Intron Amino Acid Position:
659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.2
63.6
43.6
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
77.4
0.62
0.8
72.9
32
Minor 5ss
44.1
-0.6
3.2
65.8
45.2
Minor BPS
48.3
-0.1
1.9
61.43
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015697
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027716
2554373 - 2593730
39358
ENSAPLT00000016453
2554373 - 2593730
39358
ENSAPLT00000043508
2554373 - 2593730
39358
ENSAPLT00000029291
2554373 - 2593730
39358