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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2566238_2566894_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2566238 - 2566894
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
AATTACTTGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
ATTTCTGTATCA
Flanking Amino Acid:
AMYEDVILQPGTQEALKSGH
Intron Amino Acid Position:
819

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
78.6
37.2
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
63.7
0.31
1
59.3
41.7
Minor 5ss
33.5
-1.9
3.2
40.3
45.6
Minor BPS
53.4
0.1
2.2
73.26
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015697
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029291
2554373 - 2593730
39358
ENSAPLT00000027716
2554373 - 2593730
39358
ENSAPLT00000016453
2554373 - 2593730
39358
ENSAPLT00000043508
2554373 - 2593730
39358