About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2569029_2569551_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2569029 - 2569551
Intron Length:
523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTATCGATTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTTAT
U12 Branch Point Sequence:
CAAACCTTATCG
Flanking Amino Acid:
SPIATVSSNQAAAAQFQTTQ
Intron Amino Acid Position:
989

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.1
Major BPS
70
0.5
1
59.6
38.6
Major PPT
76.9
0.61
1
70.4
39.7
Minor 5ss
29.8
-2.3
3.3
37.5
47.2
Minor BPS
52.1
-0
1.8
54.42
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015697
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029291
2554373 - 2593730
39358
ENSAPLT00000027716
2554373 - 2593730
39358
ENSAPLT00000016453
2554373 - 2593730
39358