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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2571012_2571787_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2571012 - 2571787
Intron Length:
776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTAATT
5'SS Class:
major
3'SS Sequence:
CCATCTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AATTTTTTAAAA
Flanking Amino Acid:
LTAGQPLQLQGSVLQIVSAP
Intron Amino Acid Position:
1123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.1
77.6
37
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.6
0.55
0.9
68.3
37.1
Minor 5ss
38.4
-1.3
3.3
58.3
45.9
Minor BPS
67.4
0.54
1.3
71.85
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015697
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027716
2554373 - 2593730
39358
ENSAPLT00000016453
2554373 - 2593730
39358
ENSAPLT00000043508
2554373 - 2593730
39358
ENSAPLT00000029291
2554373 - 2593730
39358