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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2571956_2573935_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2571956 - 2573935
Intron Length:
1980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TTATCCTCAGTT
Flanking Amino Acid:
VPTSTAVTQQGRTAVTNLSS
Intron Amino Acid Position:
1179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
87.9
29.3
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
79.7
0.67
0.9
70.4
44.5
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
62.7
0.48
1.8
81.5
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015697
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029291
2554373 - 2593730
39358
ENSAPLT00000027716
2554373 - 2593730
39358
ENSAPLT00000016453
2554373 - 2593730
39358
ENSAPLT00000043508
2554373 - 2593730
39358