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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2575400_2575500_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2575400 - 2575500
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGCG
5'SS Class:
major
3'SS Sequence:
TTTTAAAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTATTTTAAAA
Flanking Amino Acid:
PDLRLVQYDSGKLEALAVLL
Intron Amino Acid Position:
1373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
63.8
40.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.2
0.48
1
68.9
40.9
Minor 5ss
28.9
-2.4
3.5
38.5
46.7
Minor BPS
61.9
0.37
1.4
68.54
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015697
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043508
2554373 - 2593730
39358
ENSAPLT00000029291
2554373 - 2593730
39358
ENSAPLT00000027716
2554373 - 2593730
39358
ENSAPLT00000016453
2554373 - 2593730
39358