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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2576593_2577262_F

Intron Information:

Intron Rank:
29
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2576593 - 2577262
Intron Length:
670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TCCAACTACCAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATATAC
U12 Branch Point Sequence:
TTTCTTCCAACT
Flanking Amino Acid:
NDYSMAFLTQQTIQELFEVH
Intron Amino Acid Position:
1533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
52.8
0.07
1
50.7
33.9
Major PPT
51.7
0.04
1.1
48.7
38.3
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
52.3
0.15
1.9
78.16
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015697
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029291
2554373 - 2593730
39358
ENSAPLT00000027716
2554373 - 2593730
39358
ENSAPLT00000016453
2554373 - 2593730
39358
ENSAPLT00000043508
2554373 - 2593730
39358