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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2577407_2577715_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2577407 - 2577715
Intron Length:
309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTCTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAA
Flanking Amino Acid:
SPKVARPFIEALNSIEHEDE
Intron Amino Acid Position:
1581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.1
0.54
1
74.5
34.2
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
71.1
0.66
1.3
76.99
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015697
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016453
2554373 - 2593730
39358
ENSAPLT00000043508
2554373 - 2593730
39358
ENSAPLT00000029291
2554373 - 2593730
39358
ENSAPLT00000027716
2554373 - 2593730
39358