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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2577875_2578140_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2577875 - 2578140
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCATGA
5'SS Class:
major
3'SS Sequence:
TACATTCTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTCCTTGATA
Flanking Amino Acid:
LQELVAVVDQLTPIEKYALN
Intron Amino Acid Position:
1634

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.2
59.8
42
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
74.8
0.56
0.9
68.5
37
Minor 5ss
41.8
-0.9
3.2
57
47.1
Minor BPS
86.8
1.15
0.8
90.42
23.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015697
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043508
2554373 - 2593730
39358
ENSAPLT00000029291
2554373 - 2593730
39358
ENSAPLT00000027716
2554373 - 2593730
39358
ENSAPLT00000016453
2554373 - 2593730
39358