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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2578225_2578795_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2578225 - 2578795
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATAG
5'SS Class:
strong_major
3'SS Sequence:
AACTTTTACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAA
U12 Branch Point Sequence:
TAACTTTTACCT
Flanking Amino Acid:
VDETEPRMNEVELKTVKKAW
Intron Amino Acid Position:
1662

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
71
35.5
Major BPS
70.1
0.5
1
67.3
39.3
Major PPT
65.9
0.36
0.9
58.9
41.3
Minor 5ss
36.6
-1.5
3.1
46.6
48.7
Minor BPS
55.7
0.26
1.6
70.92
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015697
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029291
2554373 - 2593730
39358
ENSAPLT00000027716
2554373 - 2593730
39358
ENSAPLT00000016453
2554373 - 2593730
39358
ENSAPLT00000043508
2554373 - 2593730
39358