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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2578928_2579050_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2578928 - 2579050
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATTCCT
5'SS Class:
major
3'SS Sequence:
TTTTGCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
ATCATTTGAATT
Flanking Amino Acid:
TYTREDAYNKEYVYEGPDGQ
Intron Amino Acid Position:
1706

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
71
39
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
89.9
0.9
0.7
84.7
30.1
Minor 5ss
38.6
-1.3
3
52.2
38.2
Minor BPS
53
0.17
1.4
67.12
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015697
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043508
2554373 - 2593730
39358
ENSAPLT00000029291
2554373 - 2593730
39358
ENSAPLT00000027716
2554373 - 2593730
39358
ENSAPLT00000016453
2554373 - 2593730
39358