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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2580007_2580510_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2580007 - 2580510
Intron Length:
504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGGCAA
5'SS Class:
major
3'SS Sequence:
TTATCTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
GTACCCTTATCT
Flanking Amino Acid:
LISEDWALLQAVKQLLELPL
Intron Amino Acid Position:
1853

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.3
65.8
41.7
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
82.1
0.72
0.9
76.9
37
Minor 5ss
25.5
-2.8
3
29.8
43.1
Minor BPS
66.3
0.59
1.6
79.73
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015697
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029291
2554373 - 2593730
39358
ENSAPLT00000027716
2554373 - 2593730
39358
ENSAPLT00000016453
2554373 - 2593730
39358
ENSAPLT00000043508
2554373 - 2593730
39358