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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2580977_2581994_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2580977 - 2581994
Intron Length:
1018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTATTTTCATT
Flanking Amino Acid:
PKKKTKSIYKTKNSRPLRTN
Intron Amino Acid Position:
1927

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
79.6
35.4
Major BPS
100
1.24
0.5
100
0
Major PPT
86.1
0.81
0.7
85.1
29.3
Minor 5ss
46
-0.4
2.8
65.5
45.8
Minor BPS
58.4
0.35
1.7
79.53
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015697
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043508
2554373 - 2593730
39358
ENSAPLT00000029291
2554373 - 2593730
39358
ENSAPLT00000027716
2554373 - 2593730
39358