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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2582132_2582661_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2582132 - 2582661
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TGCTCAATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATAAT
U12 Branch Point Sequence:
TTTTGCTCAATT
Flanking Amino Acid:
AGKRSPPIKPLLGMNPFQKN
Intron Amino Acid Position:
1956

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
77.4
33.6
Major BPS
67.7
0.44
1.1
67.9
34.4
Major PPT
70.7
0.46
0.9
67.3
38
Minor 5ss
46.7
-0.3
2.8
68.1
42.7
Minor BPS
66.6
0.6
2
88.16
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015697
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027716
2554373 - 2593730
39358
ENSAPLT00000016453
2554373 - 2593730
39358
ENSAPLT00000043508
2554373 - 2593730
39358
ENSAPLT00000029291
2554373 - 2593730
39358