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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2582935_2583489_F

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2582935 - 2583489
Intron Length:
555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTCT
5'SS Class:
major
3'SS Sequence:
TCTGATTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CTGTTTTGAAGA
Flanking Amino Acid:
RAERIAKEKKALVEQQRAQQ
Intron Amino Acid Position:
2002

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
66.6
39.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
73
0.52
0.9
65.4
40.8
Minor 5ss
37.7
-1.4
3.6
56.7
47.5
Minor BPS
48.9
-0
1.7
58.78
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015697
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029291
2554373 - 2593730
39358
ENSAPLT00000027716
2554373 - 2593730
39358
ENSAPLT00000016453
2554373 - 2593730
39358
ENSAPLT00000043508
2554373 - 2593730
39358