Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2584952_2585535_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2584952 - 2585535

Intron Length:

584

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTGAGTAGA

5'SS Class:

major

3'SS Sequence:

TGTTCCTCTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GAATAAT

U12 Branch Point Sequence:

GGTATGAGAACT

Flanking Amino Acid:

ASPVIPGTLTTSGGTATAQV

Intron Amino Acid Position:

2121

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.8

0.49

1.1

67.4

39.4

Major BPS

62.3

0.31

1.3

64.3

39.7

Major PPT

80.3

0.68

0.8

78.2

30.6

Minor 5ss

32.6

-2

2.8

43.2

43.8

Minor BPS

40.9

-0.6

2.2

60.21

42.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015697

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029291

2554373 - 2593730

39358

ENSAPLT00000027716

2554373 - 2593730

39358

ENSAPLT00000016453

2554373 - 2593730

39358

ENSAPLT00000043508

2554373 - 2593730

39358