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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2585741_2586276_F

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2585741 - 2586276
Intron Length:
536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTC
Flanking Amino Acid:
TRSLVTQVTPATPTVQLSGK
Intron Amino Acid Position:
2189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
80.9
31.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.8
0.87
0.7
84.3
29.4
Minor 5ss
38.1
-1.3
3
52.4
44.3
Minor BPS
67.3
0.52
1.5
77.16
33.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015697
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029291
2554373 - 2593730
39358
ENSAPLT00000027716
2554373 - 2593730
39358
ENSAPLT00000016453
2554373 - 2593730
39358
ENSAPLT00000043508
2554373 - 2593730
39358