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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2588254_2588472_F

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2588254 - 2588472
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTACT
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TAGTTATTGATG
Flanking Amino Acid:
AQGQATVQQKINAQQVTVQT
Intron Amino Acid Position:
2422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
77.5
37.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
92.8
0.96
0.6
88.9
20.3
Minor 5ss
37.4
-1.4
3
52.9
43.6
Minor BPS
49.9
-0.1
1.7
55.56
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015697
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027716
2554373 - 2593730
39358
ENSAPLT00000016453
2554373 - 2593730
39358
ENSAPLT00000043508
2554373 - 2593730
39358
ENSAPLT00000029291
2554373 - 2593730
39358