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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2588635_2589386_F

Intron Information:

Intron Rank:
49
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2588635 - 2589386
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGGTA
5'SS Class:
major
3'SS Sequence:
CATATCAATAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTTTCTTTATTT
Flanking Amino Acid:
GTQQVQAQIQVAKLPQVVQQ
Intron Amino Acid Position:
2476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
66.6
39
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
55.1
0.12
1.1
53.6
39.4
Minor 5ss
31.1
-2.2
3.9
46.3
49
Minor BPS
69.3
0.68
1.6
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015697
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029291
2554373 - 2593730
39358
ENSAPLT00000027716
2554373 - 2593730
39358
ENSAPLT00000016453
2554373 - 2593730
39358
ENSAPLT00000043508
2554373 - 2593730
39358