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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2597531_2598155_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2597531 - 2598155
Intron Length:
625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTCATGCAG
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
TCAAGTTTGATT
Flanking Amino Acid:
MKAVTESIGQRPLPFYQQNI
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.9
0.05
1.3
47
43.1
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
91.3
0.93
0.5
92.5
17.5
Minor 5ss
27.3
-2.6
3.1
30.7
36.3
Minor BPS
48.3
-0
1.8
63.6
41.5

Associated Gene:

Gene:
NOC4L
Ensembl Gene ID:
ENSAPLG00000001340
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001526
2593862 - 2604627
10766