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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2599872_2600478_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2599872 - 2600478
Intron Length:
607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
GCTTTCTTACAG
Flanking Amino Acid:
IDFLTVAYGIGGAISLLALN
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
85.5
0.8
0.8
79.8
32.3
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
51
-0.1
1.8
56.62
44.8

Associated Gene:

Gene:
NOC4L
Ensembl Gene ID:
ENSAPLG00000001340
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001526
2593862 - 2604627
10766