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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2600540_2601113_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2600540 - 2601113
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
GCCTTTTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAC
U12 Branch Point Sequence:
GCCTTTTTAACA
Flanking Amino Acid:
GLFILIHQHNLEYPDFYKKL
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
71.3
0.53
1.1
63.1
44.5
Major PPT
76.4
0.59
0.9
72.3
36.6
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
67.3
0.54
1.2
66.82
40.3

Associated Gene:

Gene:
NOC4L
Ensembl Gene ID:
ENSAPLG00000001340
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001526
2593862 - 2604627
10766