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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2602639_2603103_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2602639 - 2603103
Intron Length:
465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAG
U12 Branch Point Sequence:
AGGTATTTAGCT
Flanking Amino Acid:
VLVHRPNGPGDLSEDPYIME
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
64.7
0.37
1.5
63.7
43.9
Major PPT
84.8
0.78
0.6
85.1
22.4
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
51.7
0.13
1.8
68.19
42.5

Associated Gene:

Gene:
NOC4L
Ensembl Gene ID:
ENSAPLG00000001340
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001526
2593862 - 2604627
10766