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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2603187_2604089_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2603187 - 2604089
Intron Length:
903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTAGAC
Flanking Amino Acid:
ALESSLWELQSLQNHYHPDV
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
70.6
41.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
85.6
0.8
0.8
80.2
31.8
Minor 5ss
39.7
-1.2
2.8
49
47.2
Minor BPS
53.3
0.08
2
69.09
42

Associated Gene:

Gene:
NOC4L
Ensembl Gene ID:
ENSAPLG00000001340
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001526
2593862 - 2604627
10766