Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2604204_2604510_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2604204 - 2604510

Intron Length:

307

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGCGTTG

5'SS Class:

major

3'SS Sequence:

TCTCTTTCTGTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

TTGTACTGAATT

Flanking Amino Acid:

SGLLELSASELFDKEVKKSA

Intron Amino Acid Position:

407

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.9

0.4

1.3

61.3

45.8

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

84.5

0.78

0.6

80.9

24.3

Minor 5ss

44.5

-0.6

3.5

63.6

48.1

Minor BPS

65.5

0.56

1.6

82.04

39.3

Associated Gene:

Gene:

NOC4L

Ensembl Gene ID:

ENSAPLG00000001340

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001526

2593862 - 2604627

10766