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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2696857_2712849_R

Intron Information:

Intron Rank:
133900
Intron Class:
major
Intron Phase:
Intron Coordinates:
2696857 - 2712849
Intron Length:
15993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGATTTTT
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GTATAAAAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
78.5
31
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
93
0.97
0.7
88.8
27.4
Minor 5ss
40.9
-1
3
55.1
44.4
Minor BPS
41.3
-0.5
2.1
61.18
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019308
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029167
2694930 - 2713798
18869