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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2701099_2701577_R

Intron Information:

Intron Rank:
133906
Intron Class:
major
Intron Phase:
Intron Coordinates:
2701099 - 2701577
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGCATTTT
5'SS Class:
major
3'SS Sequence:
TTCTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
77.4
33.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
90.2
0.9
0.7
89.1
26.1
Minor 5ss
39
-1.2
3.3
57.9
46.7
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019308
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045821
2700966 - 2713798
12833