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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2701681_2709931_R

Intron Information:

Intron Rank:
133907
Intron Class:
major
Intron Phase:
Intron Coordinates:
2701681 - 2709931
Intron Length:
8251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
ATCACTTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
GTGTTATTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
75
35.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
74.6
0.55
0.9
68.2
36.8
Minor 5ss
28.4
-2.5
2.8
34.6
41.3
Minor BPS
56.4
0.28
1.6
72.14
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019308
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045821
2700966 - 2713798
12833