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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2701681_2712849_R

Intron Information:

Intron Rank:
133902
Intron Class:
major
Intron Phase:
Intron Coordinates:
2701681 - 2712849
Intron Length:
11169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGATTTTT
5'SS Class:
major
3'SS Sequence:
ATCACTTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
GTGTTATTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
78.5
31
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
74.6
0.55
0.9
68.2
36.8
Minor 5ss
40.9
-1
3
55.1
44.4
Minor BPS
56.4
0.28
1.6
72.14
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019308
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035361
2701649 - 2713798
12150