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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2710016_2713189_R

Intron Information:

Intron Rank:
133908
Intron Class:
major
Intron Phase:
Intron Coordinates:
2710016 - 2713189
Intron Length:
3174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTATTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TGCTCCTCTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1.1
81.4
33.4
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
89.7
0.89
0.7
88
29.1
Minor 5ss
48.4
-0.1
2.5
68.6
42.1
Minor BPS
54.6
0.23
1.9
73.08
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019308
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045821
2700966 - 2713798
12833