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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2738709_2739237_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2738709 - 2739237
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGAAT
5'SS Class:
major
3'SS Sequence:
TTCTTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTCTTCTAACA
Flanking Amino Acid:
PAQRFWDFTQNGPIISRDTG
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
72.2
39
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.2
0.9
0.6
89
20.3
Minor 5ss
32.2
-2
3.5
47.9
47.8
Minor BPS
56.1
0.19
1.7
68.77
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002528
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002555
2738562 - 2799928
61367