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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2739406_2746698_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2739406 - 2746698
Intron Length:
7293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATGAAT
U12 Branch Point Sequence:
CTGGGATGAATG
Flanking Amino Acid:
LYPCHGMSSQLVRYSSEGVL
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
89.4
23.3
Major BPS
49.6
-0
1.5
61.7
43.1
Major PPT
83.5
0.75
0.7
76.7
32
Minor 5ss
36.8
-1.5
2.9
50.6
45.9
Minor BPS
39.2
-0.9
2.1
40.6
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002528
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002555
2738562 - 2799928
61367