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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2749611_2753072_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2749611 - 2753072
Intron Length:
3462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTCCACTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATTTCTTTATTC
Flanking Amino Acid:
VYMAWNIPMANPGVDFGDVS
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
78.3
0.64
0.8
73.2
31.3
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
68.6
0.56
1.5
76.34
34.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002528
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002555
2738562 - 2799928
61367