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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2753259_2799302_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
2753259 - 2799302
Intron Length:
46044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
CAAACTCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
CTTTCCTCAAAC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
71.6
0.54
1
72
33.1
Major PPT
64.5
0.33
1
54.2
40.7
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
67
0.51
1.7
76.17
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002528
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002555
2738562 - 2799928
61367