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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2799338_2799845_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
2799338 - 2799845
Intron Length:
508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGTTTTTAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.8
38.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.7
0.69
0.9
71.5
42.8
Minor 5ss
37.5
-1.4
3
47.8
47.9
Minor BPS
70.1
0.63
1.3
75.76
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002528
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002555
2738562 - 2799928
61367